Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015889163.1_cds_XP_016443826.1_38953
CDS Infomation

[gene=LOC107769164] [db_xref=GeneID:107769164] [protein=protein CHUP1, chloroplastic-like] [protein_id=XP_016443826.1] [location=complement(join(192739..193608,193686..194456,195036..195118,195464..195605))] [gbkey=CDS]
Sequence

ATGATGAGAGACAAGAGGGACTTAAGGCCTGTAATCTTGAAATTTGGGGTTGCTCTAGCT
CTCTCGCTTGGTGGAATTCTCTTTGCCTTTTTCAGAACCAAAAGAATCAAGCCCTCCAAT
TCTTCTCCGTCTCCCAATTCAGGTGGTCAAAAAGGTAAGCTCAAAAATGATGATCAGAAG
ACTCCTGCCTCGTGCAATTCAGTTTTTGATGTGCCAGAGAGAGATGAGGATTTCTCCTTA
CCAAAACGCATTATCGAGAGTTCTATAAGTGGTCCATCTACAAGTGGTAGGTCTGATGGA
GATAGAGATGGGTTTCTTCTGCCAGAGTTCAATGAACTTGTAGAGGAATTCAGTTTATTT
TCAAAGGCTAATTTTTCTCCAAAGAAGGATGTTGAAACACCACAGCACGACGGAGATTCA
CCCAGAGAACATAAAATTGTTGCGGATGACCATGAGCAAGAGATTAAGAACCTTAAGAAT
ATTGTTAAAACTCTTAAAGAAAGGGAGAGGACTCTTGAGATCCAACTACTTGAGTATTAT
GGCCTTAAGGAGCAAGAATCTGCTGTAATGGAGCTTCAAAATCGGCTTAAAATAAACAAT
ATGGAGGCTAAGCTTTTGGGTCTTAAAGCCGAGTCCTTGAAGGCAGAGAAGACGAGGTTA
GAGGCTCAAGTGGCTGATTATGCAAAGGTTGTGTCAGAACTTGAAGCTGCGAAATTGAAG
ATAAAGCAGCTGAAAAAGAAACTCAGGTTGGAAGCTGATCAAAATAAGGAACAGATTTTA
TCCCTTAAAGAAAGAGTTTTGAAGTTGCGCGATGAAAAGAATCCTGTTGAAGCGGAATCA
GATGTTCAGTTAAAGCCGGAAAAACTGAAGGACTTGGAGAGCGAGGCTGATGAGTTGAGG
AAATTTAACCACAGCTTAAGAGTAGAAAACTCGACGCTGGCTGAGAGACTGGAATCCGTT
CAGTTCCTTGCCACTTCTGTTCCGGGAGATAATGAAACAAAAGCATTGGAAGAAGAAAAG
CTACAACTGAGAAAGCAAAATGAAGATTTGATAAAGGAACTTGAGCAGCTTCAAGCAGAC
CGCTGCAATGATGCCGAGGAACTAGTCTATCTTCGATGGGTGAATGCTTGCTTGCGGTAT
GAGCTGAGGAACTATCAGCCCATCCCGGGCAAAACAACTGCAAGGGACCTCAGTAAAACA
TTAAGCCCCAAATCTGAGAAGAAAGCCAAGCAACTAATTCTTGAATATGCAAATAAAGAA
GGCCAAGGGGATAAGGGGATCCACGTTTCAGATATTGATTCTGATTGGTTATCCTCTCAA
GCATCCTATCTTTCGGACTCTGGTGAGTTTGATGATACTTCTGTTGATAATTCTTCAGCC
CATAAGACCGATGCTCCAAACAAAAGCAAAGTCTTTGGTAAGCTTATGAGATTAGTACGG
GGAAAGGACCATCATCACGGTCAGAGTTCTCCGGAAATGGTTCACAGTACAGAAAGACGC
CCTAGTTATTCTTCGGGATACAACTCAGATACGGCTGCTATAGATGCTGGAGCTGTTAGG
CTCCGCAGCAGATCAAGAATCTCATCTCAGGGTTCATCCAAACAGTTTATGGATTTCAAT
CCAGTATCTCAAGGTTCAAGGAACGTTAAGGGAGAGCGCAACAACTATTTGACAGGTATG
AGGAGATATAGTGATTCATTGGATTATATCTCAAAACATCTTGCTGATTCACCTCAACAA
GAAAGAAATAACCATGACCCGGAAAATGTCCAGAAATCTGAGTTGTTGAAATATGCAGAA
GTTTTGCAAGGGTCTCGTTCTAAAACATCATTTCGTAAGAGATCAGCATCAGTTAGTTTC
TTCTAA

Peptide Sequence

PEP ID

XP_016443826.1
PEP Infomation

PREDICTED: protein CHUP1, chloroplastic-like [Nicotiana tabacum]
Sequence

MMRDKRDLRPVILKFGVALALSLGGILFAFFRTKRIKPSNSSPSPNSGGQKGKLKNDDQK
TPASCNSVFDVPERDEDFSLPKRIIESSISGPSTSGRSDGDRDGFLLPEFNELVEEFSLF
SKANFSPKKDVETPQHDGDSPREHKIVADDHEQEIKNLKNIVKTLKERERTLEIQLLEYY
GLKEQESAVMELQNRLKINNMEAKLLGLKAESLKAEKTRLEAQVADYAKVVSELEAAKLK
IKQLKKKLRLEADQNKEQILSLKERVLKLRDEKNPVEAESDVQLKPEKLKDLESEADELR
KFNHSLRVENSTLAERLESVQFLATSVPGDNETKALEEEKLQLRKQNEDLIKELEQLQAD
RCNDAEELVYLRWVNACLRYELRNYQPIPGKTTARDLSKTLSPKSEKKAKQLILEYANKE
GQGDKGIHVSDIDSDWLSSQASYLSDSGEFDDTSVDNSSAHKTDAPNKSKVFGKLMRLVR
GKDHHHGQSSPEMVHSTERRPSYSSGYNSDTAAIDAGAVRLRSRSRISSQGSSKQFMDFN
PVSQGSRNVKGERNNYLTGMRRYSDSLDYISKHLADSPQQERNNHDPENVQKSELLKYAE
VLQGSRSKTSFRKRSASVSFF

Transcript Sequence

Gene sequence data has not been registered.